Schema for TSRchitect RAMPAGE TSS Read Density - TSRchitect RAMPAGE Read Density for Different Developmental Stages

Database: DanaCAF1 Primary Table: RAMPAGE2_star_16_minus Row Count: 1 Data last updated: 2022-10-20

field	example	SQL type	info
`fileName`	/gbdb/DanaCAF1/bbi/RAMPAGE2...	`varchar(255)`	values

This table points to a file in BigWig format.

Sample Rows

fileName
/gbdb/DanaCAF1/bbi/RAMPAGE2_star/GSE89298_Dana_16_Signal.Unique.minus.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

TSRchitect RAMPAGE TSS Read Density (tss_RAMPAGE2_star) Track Description


	Description These tracks show the density of RAMPAGE reads from different developmental stages of D. ananassae embryos. The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE89298. The RAMPAGE reads were mapped against the D. ananassae (DanaCAF1) assembly using STAR. References Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013 Jan 1;29(1):15-21. Batut PJ, Gingeras TR. Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. Elife. 2017 Dec 20;6.

Description