Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DanaWGS Primary Table: gc5Base Row Count: 51,621

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	scaffold_0	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	1065	`int(10) unsigned`	range
`name`	scaffold_0.0	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	213	`int(10) unsigned`	range
`offset`	0	`int(10) unsigned`	range
`file`	/gbdb/DanaWGS/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	213	`int(10) unsigned`	range
`sumData`	8060	`double`	range
`sumSquares`	424400	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	scaffold_0	0	1065	scaffold_0.0	5	213	0	/gbdb/DanaWGS/wib/gc5Base.wib	0	100	213	8060	424400
585	scaffold_1	0	1480	scaffold_1.1	5	296	213	/gbdb/DanaWGS/wib/gc5Base.wib	0	100	296	11460	610000
585	scaffold_10	0	4510	scaffold_10.9	5	902	2394	/gbdb/DanaWGS/wib/gc5Base.wib	0	100	902	35240	1926400
585	scaffold_100	0	1215	scaffold_100.100	5	243	36372	/gbdb/DanaWGS/wib/gc5Base.wib	0	100	243	8700	435600
585	scaffold_1000	0	1170	scaffold_1000.1031	5	234	385136	/gbdb/DanaWGS/wib/gc5Base.wib	0	100	234	9900	534000
585	scaffold_10000	0	5120	scaffold_10000.11656	5	1024	5311233	/gbdb/DanaWGS/wib/gc5Base.wib	0	100	948	38830	2126900
585	scaffold_10000	5120	5185	scaffold_10000.11657	5	13	5312257	/gbdb/DanaWGS/wib/gc5Base.wib	0	80	13	520	29600
585	scaffold_10001	0	3320	scaffold_10001.11658	5	664	5312270	/gbdb/DanaWGS/wib/gc5Base.wib	0	100	629	25080	1357600
585	scaffold_10002	0	5120	scaffold_10002.11659	5	1024	5312934	/gbdb/DanaWGS/wib/gc5Base.wib	0	100	946	36380	1965200
585	scaffold_10002	5120	8000	scaffold_10002.11660	5	576	5313958	/gbdb/DanaWGS/wib/gc5Base.wib	0	100	576	27840	1660800

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different aspects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.