Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DariGB1 Primary Table: microsat Row Count: 2,294 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	LSRM01000001	`varchar(255)`	values
`chromStart`	7059	`int(10) unsigned`	range
`chromEnd`	7124	`int(10) unsigned`	range
`name`	32xAC	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	LSRM01000001	7059	7124	32xAC
585	LSRM01000001	20447	20478	15xGT
585	LSRM01000001	84238	84309	35xAG
585	LSRM01000001	107755	107793	19xTC
586	LSRM01000001	150202	150232	15xCT
586	LSRM01000001	221586	221639	26xGT
586	LSRM01000001	222035	222068	16xCT
587	LSRM01000001	278923	278959	18xGA
587	LSRM01000001	287908	287939	15xTC
587	LSRM01000001	291435	291471	18xCT

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217

Description