Schema for MAKER Predictions - MAKER Gene Predictions Produced by BCM

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for MAKER Predictions - MAKER Gene Predictions Produced by BCM

Database: DbiaGB2 Primary Table: BCM_maker Row Count: 14,177

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`name`	DBIA015712-RA	`varchar(255)`	values
`chrom`	AFFD02000037	`varchar(255)`	values
`strand`	+	`char(1)`	values
`txStart`	1738	`int(10) unsigned`	range
`txEnd`	4090	`int(10) unsigned`	range
`cdsStart`	2872	`int(10) unsigned`	range
`cdsEnd`	3987	`int(10) unsigned`	range
`exonCount`	4	`int(10) unsigned`	range
`exonStarts`	1738,3051,3441,3906,	`longblob`
`exonEnds`	2990,3188,3846,4090,	`longblob`

Sample Rows

bin	name	chrom	strand	txStart	txEnd	cdsStart	cdsEnd	exonCount	exonStarts	exonEnds
585	DBIA015712-RA	AFFD02000037	+	1738	4090	2872	3987	4	1738,3051,3441,3906,	2990,3188,3846,4090,
585	DBIA015713-RA	AFFD02000037	-	4863	21743	17693	21711	9	4863,13637,15309,18308,18793,19015,19326,19509,19767,	13636,15308,18257,18734,18958,19188,19449,19702,21743,
585	DBIA015714-RA	AFFD02000037	+	5296	7468	5296	7465	3	5296,6079,6652,	6022,6190,7468,
585	DBIA015715-RA	AFFD02000037	+	8419	17698	9149	15212	12	8419,9460,10784,11264,12565,12981,13492,13650,14015,14363,15008,15309,	9402,9668,11106,12474,12925,13445,13591,13961,14298,14528,15308,17698,
585	DBIA015573-RA	AFFD02000073	+	23622	24552	23622	24549	1	23622,	24552,
585	DBIA015576-RA	AFFD02000187	-	2	701	2	701	1	2,	701,
585	DBIA015603-RA	AFFD02000293	-	14623	23225	14623	23221	7	14623,15328,15476,15949,16799,17069,22893,	14994,15378,15718,16628,17009,17451,23225,
585	DBIA015620-RA	AFFD02000312	-	16875	17603	16878	17603	2	16875,17215,	17048,17603,
585	DBIA015517-RA	AFFD02000414	+	24410	25099	24410	25096	2	24410,24916,	24605,25099,
585	DBIA015518-RA	AFFD02000414	+	25707	26510	25707	26507	2	25707,26474,	26286,26510,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

MAKER Predictions (BCM_maker) Track Description


	Description This track shows the MAKER annotations produced by the Baylor College of Medicine Human Genome Sequencing Center (BCM-HGSC) as part of the modENCODE project. The MAKER annotations are available for download through the BCM-HGSC FTP site. The MAKER annotations are lifted from the original version 2 assembly onto the current GenBank assembly using BLAT. References Holt C, Yandell M. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics. 2011 Dec 22;12:491. Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.