Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DbiaGB2 Primary Table: gc5Base Row Count: 36,524

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFD02000001	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	1550	`int(10) unsigned`	range
`name`	AFFD02000001.0	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	310	`int(10) unsigned`	range
`offset`	0	`int(10) unsigned`	range
`file`	/gbdb/DbiaGB2/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	310	`int(10) unsigned`	range
`sumData`	9800	`double`	range
`sumSquares`	440800	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	AFFD02000001	0	1550	AFFD02000001.0	5	310	0	/gbdb/DbiaGB2/wib/gc5Base.wib	0	100	310	9800	440800
585	AFFD02000002	0	530	AFFD02000002.1	5	106	310	/gbdb/DbiaGB2/wib/gc5Base.wib	0	80	106	2820	118000
585	AFFD02000003	0	405	AFFD02000003.2	5	81	416	/gbdb/DbiaGB2/wib/gc5Base.wib	0	80	81	3980	233200
585	AFFD02000004	0	280	AFFD02000004.3	5	56	497	/gbdb/DbiaGB2/wib/gc5Base.wib	0	80	56	2200	112800
585	AFFD02000005	0	1040	AFFD02000005.4	5	208	553	/gbdb/DbiaGB2/wib/gc5Base.wib	0	100	208	8260	482000
585	AFFD02000006	0	1120	AFFD02000006.5	5	224	761	/gbdb/DbiaGB2/wib/gc5Base.wib	0	80	224	8240	420000
585	AFFD02000007	0	2385	AFFD02000007.6	5	477	985	/gbdb/DbiaGB2/wib/gc5Base.wib	0	100	477	15400	751200
585	AFFD02000008	0	1105	AFFD02000008.7	5	221	1462	/gbdb/DbiaGB2/wib/gc5Base.wib	0	100	221	8320	449600
585	AFFD02000009	0	1495	AFFD02000009.8	5	299	1683	/gbdb/DbiaGB2/wib/gc5Base.wib	0	100	299	10220	513200
585	AFFD02000010	0	1355	AFFD02000010.9	5	271	1982	/gbdb/DbiaGB2/wib/gc5Base.wib	0	100	271	10220	547600

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.