Schema for RNA PolII Peaks - RNA Polymerase II ChIP-Seq Peaks Identified by MACS

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Schema for RNA PolII Peaks - RNA Polymerase II ChIP-Seq Peaks Identified by MACS

Database: DbiaGB2 Primary Table: RNAPolII_macs Row Count: 17,632

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFD02000037	`varchar(255)`	values
`chromStart`	2860	`int(10) unsigned`	range
`chromEnd`	3221	`int(10) unsigned`	range
`name`	DbiaGB2_RNAPolII_peak_1	`varchar(255)`	values
`score`	58	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.17882	`float`	range
`pValue`	7.58355	`float`	range
`qValue`	5.83589	`float`	range
`peak`	130	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	AFFD02000037	2860	3221	DbiaGB2_RNAPolII_peak_1	58	.	2.17882	7.58355	5.83589	130
585	AFFD02000037	7677	8171	DbiaGB2_RNAPolII_peak_2	224	.	3.02196	25.2345	22.4816	216
585	AFFD02000037	11963	12125	DbiaGB2_RNAPolII_peak_3	22	.	1.70561	3.66799	2.23683	51
585	AFFD02000187	4496	4728	DbiaGB2_RNAPolII_peak_4	65	.	2.22507	8.31282	6.52058	43
585	AFFD02000187	8314	9313	DbiaGB2_RNAPolII_peak_5	260	.	3.49411	29.1317	26.0416	350
585	AFFD02000187	10820	11188	DbiaGB2_RNAPolII_peak_6	33	.	1.90131	4.95325	3.39146	64
585	AFFD02000293	8622	8982	DbiaGB2_RNAPolII_peak_7	51	.	2.10173	6.88209	5.17938	222
585	AFFD02000293	13409	13663	DbiaGB2_RNAPolII_peak_8	48	.	2.0709	6.54204	4.86155	191
585	AFFD02000293	14663	15005	DbiaGB2_RNAPolII_peak_9	58	.	2.1634	7.58355	5.83589	264
585	AFFD02000293	15447	15748	DbiaGB2_RNAPolII_peak_10	45	.	2.02465	6.20928	4.55046	160

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII Peaks (polII_macs) Track Description


	Description This track shows the regions in the genome that are significantly enriched in RNA Polymerase II ChIP-Seq reads as determined by MACS. The merged track was created by combining the mapped reads from replicates 1 and 2 prior to performing the peak calls. Credits Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. The ChIP-Seq data were produced by the Washington University Genome Technology Access Center under the run ID HiSeq 1401_3