Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

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Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DbiaGB2 Primary Table: microsat Row Count: 103 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFD02001119	`varchar(255)`	values
`chromStart`	3	`int(10) unsigned`	range
`chromEnd`	34	`int(10) unsigned`	range
`name`	15xTA	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	AFFD02001119	3	34	15xTA
585	AFFD02004617	1003	1036	16xAT
585	AFFD02005177	2454	2490	18xAT
585	AFFD02005347	30401	30431	15xAT
585	AFFD02005523	5174	5205	15xAT
585	AFFD02005547	1655	1687	16xTA
585	AFFD02005774	9658	10089	143xAAT
585	AFFD02005816	5812	5936	41xAAT
585	AFFD02005855	16243	16291	24xTA
585	AFFD02005888	423	454	15xAT

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217