Schema for modENCODE RNA-Seq Coverage - modENCODE D. bipectinata RNA-Seq Coverage
  Database: DbipGB2    Primary Table: coverage_females    Row Count: 1
fieldexampleSQL type info
fileName /gbdb/DbipGB2/bbi/DbipGB2_f...varchar(255) values

This table points to a file in BigWig format.

Sample Rows
 
fileName
/gbdb/DbipGB2/bbi/DbipGB2_females_thout.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE RNA-Seq Coverage (modencode_coverage) Track Description
 

Description

This track was created by mapping D. bipectinata RNA-Seq reads (generated by the modENCODE project) against the D. bipectinata DbipGB2 assembly using Bowtie2 and TopHat. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the BioProject accession number PRJNA63469.

References

Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.

Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009 May 1;25(9):1105-11.