Schema for Tallymer - Repetitive Regions Identified by Tallymer

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Database: DbipGB2 Primary Table: tallymer Data last updated: 2017-08-17
Big Bed File: /gbdb/DbipGB2/bbi/DbipGB2.tallymer.bb
Item Count: 226,282
Format description: Browser Extensible Data

field	example	description
`chrom`	AFFE02000007	Reference sequence chromosome or scaffold
`chromStart`	0	Start position in chromosome
`chromEnd`	94	End position in chromosome
`name`	tallymer_564	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
AFFE02000007	0	94	tallymer_564
AFFE02000007	97	503	tallymer_565
AFFE02000007	504	563	tallymer_566
AFFE02000007	568	616	tallymer_567
AFFE02000007	617	1057	tallymer_568

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. bipectinata genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References