Schema for GlimmerHMM - GlimmerHMM Gene Predictions
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Database: DbusGB1 Primary Table: glimmer Row Count: 13,739   Data last updated: 2022-10-20
field | example | SQL type | info |
bin | 585 | smallint(5) unsigned | range |
name | CP012523.path1.gene1 | varchar(255) | values |
chrom | CP012523 | varchar(255) | values |
strand | + | char(1) | values |
txStart | 1185 | int(10) unsigned | range |
txEnd | 2505 | int(10) unsigned | range |
cdsStart | 1185 | int(10) unsigned | range |
cdsEnd | 2505 | int(10) unsigned | range |
exonCount | 2 | int(10) unsigned | range |
exonStarts | 1185,2326, | longblob | |
exonEnds | 1399,2505, | longblob | |
score | 0 | int(11) | range |
name2 | CP012523.path1.gene1 | varchar(255) | values |
cdsStartStat | unk | enum('none', 'unk', 'incmpl', 'cmpl') | values |
cdsEndStat | unk | enum('none', 'unk', 'incmpl', 'cmpl') | values |
exonFrames | 0,1, | longblob | |
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Sample Rows
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bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds | score | name2 | cdsStartStat | cdsEndStat | exonFrames |
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585 | CP012523.path1.gene1 | CP012523 | + | 1185 | 2505 | 1185 | 2505 | 2 | 1185,2326, | 1399,2505, | 0 | CP012523.path1.gene1 | unk | unk | 0,1, |
585 | CP012523.path1.gene2 | CP012523 | + | 12359 | 14987 | 12359 | 14987 | 3 | 12359,14326,14780, | 12473,14506,14987, | 0 | CP012523.path1.gene2 | unk | unk | 0,0,0, |
585 | CP012523.path1.gene3 | CP012523 | - | 29495 | 30559 | 29495 | 30559 | 2 | 29495,30458, | 29628,30559, | 0 | CP012523.path1.gene3 | unk | unk | 2,0, |
585 | CP012523.path1.gene4 | CP012523 | - | 34561 | 78712 | 34561 | 78712 | 7 | 34561,38845,42334,42770,43722,69795,78564, | 37830,40134,42707,43181,44872,69890,78712, | 0 | CP012523.path1.gene4 | unk | unk | 1,2,1,1,0,1,0, |
585 | CP012523.path1.gene5 | CP012523 | + | 90428 | 93601 | 90428 | 93601 | 2 | 90428,91729, | 90905,93601, | 0 | CP012523.path1.gene5 | unk | unk | 0,0, |
585 | CP012523.path1.gene6 | CP012523 | + | 96266 | 101280 | 96266 | 101280 | 11 | 96266,96801,96977,97181,97784,98112,98413,99028,99637,100286,101165, | 96495,96900,97112,97725,97996,98283,98554,99577,100224,101101,101280, | 0 | CP012523.path1.gene6 | unk | unk | 0,1,1,1,2,1,1,1,1,0,2, |
585 | CP012523.path1.gene7 | CP012523 | + | 105611 | 108689 | 105611 | 108689 | 4 | 105611,105809,106540,108673, | 105639,106489,108603,108689, | 0 | CP012523.path1.gene7 | unk | unk | 0,1,0,2, |
585 | CP012523.path1.gene8 | CP012523 | - | 110982 | 111957 | 110982 | 111957 | 1 | 110982, | 111957, | 0 | CP012523.path1.gene8 | unk | unk | 0, |
585 | CP012523.path1.gene9 | CP012523 | + | 114353 | 123106 | 114353 | 123106 | 6 | 114353,115264,115582,116163,122360,122754, | 114358,115530,115674,116303,122483,123106, | 0 | CP012523.path1.gene9 | unk | unk | 0,2,1,0,2,2, |
586 | CP012523.path1.gene10 | CP012523 | + | 132278 | 134291 | 132278 | 134291 | 4 | 132278,132978,133794,134275, | 132702,133073,133910,134291, | 0 | CP012523.path1.gene10 | unk | unk | 0,1,0,2, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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GlimmerHMM (glimmer) Track Description
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