Schema for CpG Islands - CpG Islands Identified by newcpgreport

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Schema for CpG Islands - CpG Islands Identified by newcpgreport

Database: DereCAF1 Primary Table: cpg_islands Row Count: 64,049 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	scaffold_1000	`varchar(255)`	values
`chromStart`	847	`int(10) unsigned`	range
`chromEnd`	1015	`int(10) unsigned`	range
`name`	cpg_8428	`varchar(255)`	values
`score`	75	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	scaffold_1000	847	1015	cpg_8428	75	+
585	scaffold_1008	48	483	cpg_8765	96	+
585	scaffold_1008	728	1021	cpg_8766	74	+
585	scaffold_1008	1023	1307	cpg_8767	85	+
585	scaffold_1009	48	352	cpg_8678	90	+
585	scaffold_1009	597	903	cpg_8679	85	+
585	scaffold_1010	116	407	cpg_8820	76	+
585	scaffold_1010	409	693	cpg_8821	80	+
585	scaffold_1023	434	637	cpg_8673	92	+
585	scaffold_1024	1210	1451	cpg_8885	101	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.