Schema for RAMPAGE TSS Read Density - RAMPAGE Read Density for Different Developmental Stages

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Schema for RAMPAGE TSS Read Density - RAMPAGE Read Density for Different Developmental Stages

Database: DereCAF1 Primary Table: RAMPAGE2_02_minus Row Count: 1 Data last updated: 2022-10-20

field	example	SQL type	info
`fileName`	/gbdb/DereCAF1/bbi/RAMPAGE2...	`varchar(255)`	values

This table points to a file in BigWig format.

Sample Rows

fileName
/gbdb/DereCAF1/bbi/RAMPAGE2/GSM2365710_Dere_02_minus.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RAMPAGE TSS Read Density (tss_RAMPAGE2) Track Description


	Description These tracks show the density of RAMPAGE reads from different developmental stages of D. erecta embryos. The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE89304. References Batut PJ, Gingeras TR. Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. Elife. 2017 Dec 20;6. Batut P, Dobin A, Plessy C, Carninci P, Gingeras TR. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Res. 2013 Jan;23(1):169-80.