Schema for MAKER Predictions - MAKER Gene Predictions Produced by BCM

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Schema for MAKER Predictions - MAKER Gene Predictions Produced by BCM

Database: DeugGB2 Primary Table: BCM_maker Row Count: 14,599

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`name`	DEUG013525-RA	`varchar(255)`	values
`chrom`	AFPQ02000031	`varchar(255)`	values
`strand`	+	`char(1)`	values
`txStart`	14297	`int(10) unsigned`	range
`txEnd`	23875	`int(10) unsigned`	range
`cdsStart`	18173	`int(10) unsigned`	range
`cdsEnd`	23765	`int(10) unsigned`	range
`exonCount`	11	`int(10) unsigned`	range
`exonStarts`	14297,17173,17443,18398,186...	`longblob`
`exonEnds`	17172,17390,18298,18558,188...	`longblob`

Sample Rows

bin	name	chrom	strand	txStart	txEnd	cdsStart	cdsEnd	exonCount	exonStarts	exonEnds
585	DEUG013525-RA	AFPQ02000031	+	14297	23875	18173	23765	11	14297,17173,17443,18398,18699,18893,19474,21267,23136,23309,23657,	17172,17390,18298,18558,18837,19362,19854,21531,23247,23600,23875,
585	DEUG014495-RA	AFPQ02000100	-	3866	6065	3869	6065	4	3866,4617,4864,5108,	4612,4859,5037,6065,
585	DEUG014239-RA	AFPQ02000273	+	9902	10679	9902	10679	2	9902,10547,	10358,10679,
585	DEUG013990-RA	AFPQ02000303	-	18603	18927	18606	18927	1	18603,	18927,
585	DEUG013650-RA	AFPQ02000362	+	5468	6527	5468	6524	1	5468,	6527,
585	DEUG013651-RA	AFPQ02000362	+	6553	8042	6553	8039	2	6553,7467,	7280,8042,
585	DEUG013652-RA	AFPQ02000362	+	8057	13530	8057	13527	4	8057,9030,10135,12903,	8959,10051,12814,13530,
585	DEUG013653-RA	AFPQ02000362	-	15425	16544	15428	16544	1	15425,	16544,
585	DEUG013654-RA	AFPQ02000362	-	16628	18082	16631	18082	2	16628,16951,	16916,18082,
585	DEUG013655-RA	AFPQ02000362	-	18136	19282	18139	19282	2	18136,18641,	18593,19282,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

MAKER Predictions (BCM_maker) Track Description


	Description This track shows the MAKER annotations produced by the Baylor College of Medicine Human Genome Sequencing Center (BCM-HGSC) as part of the modENCODE project. The MAKER annotations are available for download through the BCM-HGSC FTP site. The MAKER annotations are lifted from the original version 2 assembly onto the current GenBank assembly using BLAT. References Holt C, Yandell M. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics. 2011 Dec 22;12:491. Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.