Schema for GlimmerHMM - GlimmerHMM Gene Predictions
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Database: DeugGB2 Primary Table: glimmer Row Count: 31,769
field | example | SQL type | info |
bin | 585 | smallint(5) unsigned | range |
name | AFPQ02000006.path1.gene1 | varchar(255) | values |
chrom | AFPQ02000006 | varchar(255) | values |
strand | + | char(1) | values |
txStart | 753 | int(10) unsigned | range |
txEnd | 975 | int(10) unsigned | range |
cdsStart | 753 | int(10) unsigned | range |
cdsEnd | 975 | int(10) unsigned | range |
exonCount | 1 | int(10) unsigned | range |
exonStarts | 753, | longblob | |
exonEnds | 975, | longblob | |
score | 0 | int(11) | range |
name2 | AFPQ02000006.path1.gene1 | varchar(255) | values |
cdsStartStat | incmpl | enum('none', 'unk', 'incmpl', 'cmpl') | values |
cdsEndStat | incmpl | enum('none', 'unk', 'incmpl', 'cmpl') | values |
exonFrames | 0, | longblob | |
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Sample Rows
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bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds | score | name2 | cdsStartStat | cdsEndStat | exonFrames |
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585 | AFPQ02000006.path1.gene1 | AFPQ02000006 | + | 753 | 975 | 753 | 975 | 1 | 753, | 975, | 0 | AFPQ02000006.path1.gene1 | incmpl | incmpl | 0, |
585 | AFPQ02000009.path1.gene1 | AFPQ02000009 | - | 820 | 1012 | 820 | 1012 | 1 | 820, | 1012, | 0 | AFPQ02000009.path1.gene1 | incmpl | incmpl | 0, |
585 | AFPQ02000010.path1.gene1 | AFPQ02000010 | + | 407 | 614 | 407 | 614 | 1 | 407, | 614, | 0 | AFPQ02000010.path1.gene1 | incmpl | incmpl | 0, |
585 | AFPQ02000014.path1.gene1 | AFPQ02000014 | - | 452 | 611 | 452 | 611 | 1 | 452, | 611, | 0 | AFPQ02000014.path1.gene1 | incmpl | incmpl | 0, |
585 | AFPQ02000020.path1.gene1 | AFPQ02000020 | + | 81 | 1309 | 81 | 1309 | 2 | 81,961, | 176,1309, | 0 | AFPQ02000020.path1.gene1 | incmpl | incmpl | 0,2, |
585 | AFPQ02000021.path1.gene1 | AFPQ02000021 | + | 47 | 1031 | 47 | 1031 | 1 | 47, | 1031, | 0 | AFPQ02000021.path1.gene1 | incmpl | incmpl | 0, |
585 | AFPQ02000026.path1.gene1 | AFPQ02000026 | - | 811 | 1027 | 811 | 1027 | 1 | 811, | 1027, | 0 | AFPQ02000026.path1.gene1 | incmpl | incmpl | 0, |
585 | AFPQ02000027.path1.gene1 | AFPQ02000027 | - | 786 | 919 | 786 | 919 | 1 | 786, | 919, | 0 | AFPQ02000027.path1.gene1 | incmpl | incmpl | 0, |
585 | AFPQ02000031.path1.gene1 | AFPQ02000031 | + | 8911 | 8988 | 8911 | 8988 | 1 | 8911, | 8988, | 0 | AFPQ02000031.path1.gene1 | incmpl | incmpl | 0, |
585 | AFPQ02000031.path1.gene2 | AFPQ02000031 | + | 9442 | 33354 | 9442 | 33354 | 11 | 9442,13667,18142,18398,18699,18893,19491,21267,23092,23309,33323, | 9494,13764,18298,18558,18837,19388,19917,21538,23247,23764,33354, | 0 | AFPQ02000031.path1.gene2 | incmpl | incmpl | 0,1,2,2,0,0,0,0,1,0,2, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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GlimmerHMM (glimmer) Track Description
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