Schema for Gap - Gap Locations

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Schema for Gap - Gap Locations

Database: DeugGB2 Primary Table: gap Row Count: 2,622

field	example	SQL type	info
`bin`	585	`smallint(6)`	range
`chrom`	KB464448	`varchar(255)`	values
`chromStart`	1775	`int(10) unsigned`	range
`chromEnd`	2839	`int(10) unsigned`	range
`ix`	2	`int(11)`	range
`n`	N	`char(1)`	values
`size`	1064	`int(10) unsigned`	range
`type`	scaffold	`varchar(255)`	values
`bridge`	yes	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	ix	n	size	type	bridge
585	KB464448	1775	2839	2	N	1064	scaffold	yes
585	KB464449	2034	2845	2	N	811	scaffold	yes
585	KB464449	3780	5102	4	N	1322	scaffold	yes
585	KB464450	39369	39389	2	N	20	scaffold	yes
585	KB464451	932	2598	2	N	1666	scaffold	yes
585	KB464452	728	2217	2	N	1489	scaffold	yes
585	KB464453	2004	2024	2	N	20	scaffold	yes
585	KB464453	2132	2152	4	N	20	scaffold	yes
585	KB464454	1037	2387	2	N	1350	scaffold	yes
585	KB464455	1036	1056	2	N	20	scaffold	yes

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Gap (gap) Track Description


	Description This track depicts gaps — represented by black boxes — in the D. eugracilis genome sequence. An assembly region is designated as a gap if the sequence contains a series of Ns. The minimum number of Ns that constitute a gap varies among assemblies.