Schema for modENCODE RNA-Seq Coverage - modENCODE D. eugracilis RNA-Seq Coverage

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Schema for modENCODE RNA-Seq Coverage - modENCODE D. eugracilis RNA-Seq Coverage

Database: DeugGB2 Primary Table: coverage_males Row Count: 1

field	example	SQL type	info
`fileName`	/gbdb/DeugGB2/bbi/DeugGB2_m...	`varchar(255)`	values

This table points to a file in BigWig format.

Sample Rows

fileName
/gbdb/DeugGB2/bbi/DeugGB2_males_thout.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE RNA-Seq Coverage (modencode_coverage) Track Description


	Description This track was created by mapping D. eugracilis RNA-Seq reads (generated by the modENCODE project) against the D. eugracilis DeugGB2 assembly using Bowtie2 and TopHat. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the BioProject accession number PRJNA63469. References Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23. Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009 May 1;25(9):1105-11.