Schema for modENCODE TransDecoder Transcripts - D. eugracilis TransDecoder Transcripts from modENCODE RNA-Seq

Database: DeugGB2 Primary Table: modencode_transdecoder Row Count: 28,808

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`name`	DeugGB2_eggs_CUFF.4.1_m.6	`varchar(255)`	values
`chrom`	AFPQ02000009	`varchar(255)`	values
`strand`	-	`char(1)`	values
`txStart`	3	`int(10) unsigned`	range
`txEnd`	1056	`int(10) unsigned`	range
`cdsStart`	793	`int(10) unsigned`	range
`cdsEnd`	1054	`int(10) unsigned`	range
`exonCount`	1	`int(10) unsigned`	range
`exonStarts`	3,	`longblob`
`exonEnds`	1056,	`longblob`

Sample Rows

bin	name	chrom	strand	txStart	txEnd	cdsStart	cdsEnd	exonCount	exonStarts	exonEnds
585	DeugGB2_eggs_CUFF.4.1_m.6	AFPQ02000009	-	3	1056	793	1054	1	3,	1056,
585	DeugGB2_eggs_CUFF.6.1_m.10	AFPQ02000010	+	4	1173	401	614	1	4,	1173,
585	DeugGB2_eggs_CUFF.5.1_m.12	AFPQ02000014	-	24	1125	452	611	1	24,	1125,
585	DeugGB2_eggs_CUFF.9.1_m.18	AFPQ02000025	-	11	1107	11	179	1	11,	1107,
585	DeugGB2_males_CUFF.5.1_m.6	AFPQ02000027	-	63	965	524	964	2	63,786,	616,965,
585	DeugGB2_eggs_CUFF.11.1_m.25	AFPQ02000027	-	71	1118	524	919	2	71,786,	616,1118,
585	DeugGB2_eggs_CUFF.13.1_m.58	AFPQ02000031	-	2727	12479	5623	6241	1	2727,	12479,
585	DeugGB2_eggs_CUFF.12.1_m.92	AFPQ02000031	+	12557	13691	12557	12707	1	12557,	13691,
585	DeugGB2_males_CUFF.9.1_m.9	AFPQ02000031	+	17154	24035	18717	23768	8	17154,18080,18893,19439,21267,23092,23309,23657,	17367,18837,19384,19917,21538,23247,23600,24035,
585	DeugGB2_males_CUFF.9.2_m.17	AFPQ02000031	+	17154	24035	18278	23768	10	17154,18080,18398,18699,18893,19439,21267,23092,23309,23657,	17367,18298,18558,18837,19384,19917,21538,23247,23600,24035,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE TransDecoder Transcripts (modencode_transdecoder) Track Description


	Description This track shows the putative coding regions within Cufflinks transcripts that have been identified by TransDecoder. References Haas BJ et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc. 2013 Aug;8(8):1494-512.

Description