Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

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Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DeugGB2 Primary Table: microsat Row Count: 181 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	586	`smallint(5) unsigned`	range
`chrom`	AFPQ02002236	`varchar(255)`	values
`chromStart`	189241	`int(10) unsigned`	range
`chromEnd`	189272	`int(10) unsigned`	range
`name`	15xAT	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
586	AFPQ02002236	189241	189272	15xAT
585	AFPQ02002579	618	654	18xAT
585	AFPQ02003040	30471	30507	18xTA
585	AFPQ02004276	619	738	39xACG
585	AFPQ02004464	21	56	17xTA
585	AFPQ02004778	0	40	20xTA
592	AFPQ02004874	1042961	1042999	19xAT
595	AFPQ02004874	1335933	1335969	18xAG
585	AFPQ02004930	26057	26087	15xTA
585	AFPQ02005167	69612	69648	18xAT

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217