Schema for RNA PolII ChIP-Seq (Individual Replicates) - RNA Polymerase II ChIP-Seq (Individual Replicates)

Database: DficGB2 Primary Table: PolII_bio1_rep1_macs Row Count: 28,187 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFG02000133	`varchar(255)`	values
`chromStart`	1047	`int(10) unsigned`	range
`chromEnd`	1265	`int(10) unsigned`	range
`name`	DficGB2_bio1_PolII_rep1_mac...	`varchar(255)`	values
`score`	483	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	5.21276	`float`	range
`pValue`	50.7185	`float`	range
`qValue`	48.3692	`float`	range
`peak`	111	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	AFFG02000133	1047	1265	DficGB2_bio1_PolII_rep1_macs_peak_1	483	.	5.21276	50.7185	48.3692	111
585	AFFG02000152	760	1006	DficGB2_bio1_PolII_rep1_macs_peak_2	65	.	2.2583	8.07578	6.58566	108
585	AFFG02000158	1280	1513	DficGB2_bio1_PolII_rep1_macs_peak_3	348	.	4.89076	36.9475	34.8215	105
585	AFFG02000162	204	434	DficGB2_bio1_PolII_rep1_macs_peak_4	242	.	3.87334	26.1753	24.2423	89
585	AFFG02000162	757	980	DficGB2_bio1_PolII_rep1_macs_peak_5	101	.	2.34448	11.7909	10.1808	99
585	AFFG02000164	73	275	DficGB2_bio1_PolII_rep1_macs_peak_6	95	.	2.34459	11.0923	9.50204	99
585	AFFG02000182	889	1043	DficGB2_bio1_PolII_rep1_macs_peak_7	170	.	3.50746	18.8753	17.0896	77
585	AFFG02000183	731	967	DficGB2_bio1_PolII_rep1_macs_peak_8	719	.	7.19626	74.6338	71.9149	113
585	AFFG02000184	944	1134	DficGB2_bio1_PolII_rep1_macs_peak_9	320	.	4.70632	34.1315	32.0537	93
585	AFFG02000184	1547	1836	DficGB2_bio1_PolII_rep1_macs_peak_10	496	.	5.85907	52.0191	49.6496	156

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII ChIP-Seq (Individual Replicates) (polII_chipseq_replicates) Track Description


	Description These tracks show the log-likelihood enrichment profiles and the regions that are significantly enriched in RNA Polymerase II as determined by MACS2. The RNA Polymerase II dataset consists of two biological replicates. Each biological replicate has two technical replicates. Credits Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. The ChIP-Seq data were produced by the Washington University Genome Technology Access Center under the run ID HiSeq 2220_3

Description