Schema for GlimmerHMM - GlimmerHMM Gene Predictions
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Database: DgriCAF1 Primary Table: glimmer Row Count: 17,082   Data last updated: 2022-10-20
field | example | SQL type | info |
bin | 585 | smallint(5) unsigned | range |
name | scaffold_10012.path1.gene1 | varchar(255) | values |
chrom | scaffold_10012 | varchar(255) | values |
strand | + | char(1) | values |
txStart | 66 | int(10) unsigned | range |
txEnd | 1388 | int(10) unsigned | range |
cdsStart | 66 | int(10) unsigned | range |
cdsEnd | 1388 | int(10) unsigned | range |
exonCount | 3 | int(10) unsigned | range |
exonStarts | 66,801,1367, | longblob | |
exonEnds | 441,891,1388, | longblob | |
score | 0 | int(11) | range |
name2 | scaffold_10012.path1.gene1 | varchar(255) | values |
cdsStartStat | unk | enum('none', 'unk', 'incmpl', 'cmpl') | values |
cdsEndStat | unk | enum('none', 'unk', 'incmpl', 'cmpl') | values |
exonFrames | 0,0,0, | longblob | |
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Sample Rows
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bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds | score | name2 | cdsStartStat | cdsEndStat | exonFrames |
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585 | scaffold_10012.path1.gene1 | scaffold_10012 | + | 66 | 1388 | 66 | 1388 | 3 | 66,801,1367, | 441,891,1388, | 0 | scaffold_10012.path1.gene1 | unk | unk | 0,0,0, |
585 | scaffold_10018.path1.gene1 | scaffold_10018 | - | 780 | 981 | 780 | 981 | 1 | 780, | 981, | 0 | scaffold_10018.path1.gene1 | unk | unk | 0, |
585 | scaffold_10021.path1.gene1 | scaffold_10021 | + | 22 | 688 | 22 | 688 | 2 | 22,664, | 130,688, | 0 | scaffold_10021.path1.gene1 | unk | unk | 0,0, |
585 | scaffold_10024.path1.gene1 | scaffold_10024 | - | 90 | 1307 | 90 | 1307 | 2 | 90,1100, | 297,1307, | 0 | scaffold_10024.path1.gene1 | unk | unk | 0,0, |
585 | scaffold_10027.path1.gene1 | scaffold_10027 | + | 158 | 969 | 158 | 969 | 4 | 158,625,806,949, | 421,725,894,969, | 0 | scaffold_10027.path1.gene1 | unk | unk | 0,2,0,1, |
585 | scaffold_10030.path1.gene1 | scaffold_10030 | - | 758 | 5323 | 758 | 5323 | 2 | 758,5256, | 1003,5323, | 0 | scaffold_10030.path1.gene1 | unk | unk | 1,0, |
585 | scaffold_10030.path1.gene2 | scaffold_10030 | + | 8467 | 25124 | 8467 | 25124 | 13 | 8467,8851,9210,15139,15405,15754,16569,16833,17107,17394,21755,22255,25103, | 8626,9139,9312,15348,15569,15881,16775,17051,17332,17619,21913,22373,25124, | 0 | scaffold_10030.path1.gene2 | unk | unk | 0,0,0,0,2,1,2,1,0,0,0,2,0, |
585 | scaffold_10032.path1.gene1 | scaffold_10032 | + | 293 | 536 | 293 | 536 | 2 | 293,410, | 398,536, | 0 | scaffold_10032.path1.gene1 | unk | unk | 0,0, |
585 | scaffold_10033.path1.gene1 | scaffold_10033 | + | 632 | 1783 | 632 | 1783 | 2 | 632,1229, | 876,1783, | 0 | scaffold_10033.path1.gene1 | unk | unk | 0,1, |
585 | scaffold_10039.path1.gene1 | scaffold_10039 | - | 3195 | 3626 | 3195 | 3626 | 2 | 3195,3323, | 3237,3626, | 0 | scaffold_10039.path1.gene1 | unk | unk | 0,0, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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GlimmerHMM (glimmer) Track Description
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