field | example | description |
chrom | scaffold_10075 | Reference sequence chromosome or scaffold |
chromStart | 534 | Start position in chromosome |
chromEnd | 605 | End position in chromosome |
name | tRNA-Lys-CTT-scaffold_10075-1 | Short Name of item |
score | 1000 | Score from 0-1000 |
strand | - | + or - |
thickStart | 534 | Start of where display should be thick (start codon) |
thickEnd | 605 | End of where display should be thick (stop codon) |
reserved | 0,0,0 | Used as itemRgb as of 2004-11-22 |
blockCount | 1 | Number of blocks |
blockSizes | 71 | Comma separated list of block sizes |
chromStarts | 0 | Start positions relative to chromStart |
tRNAType | Lys | tRNA type |
antiCodon | CTT | Anticodon |
trnaScore | 23.0 | Infernal Score |
hmmScore | 18.10 | Primary structure-only (HMM) score |
str2Score | 4.90 | Secondary structure-only score |
isotypeCM | Lys | Isotype covariance model |
isotypeScore | 45.2 | Isotype score |
notes | pseudo,trunc_end:52 | EukHighConfidenceFilter notes |