Schema for CpG Islands - CpG Islands Identified by newcpgreport

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Schema for CpG Islands - CpG Islands Identified by newcpgreport

Database: DgriCAF1 Primary Table: cpg_islands Row Count: 46,500 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	scaffold_0	`varchar(255)`	values
`chromStart`	230	`int(10) unsigned`	range
`chromEnd`	514	`int(10) unsigned`	range
`name`	cpg_14286	`varchar(255)`	values
`score`	102	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	scaffold_0	230	514	cpg_14286	102	+
585	scaffold_0	1161	1261	cpg_14287	84	+
585	scaffold_0	1418	1559	cpg_14288	110	+
585	scaffold_0	1679	1914	cpg_14289	121	+
585	scaffold_1000	163	288	cpg_11047	101	+
585	scaffold_10001	252	342	cpg_11850	71	+
585	scaffold_10001	473	613	cpg_11851	103	+
585	scaffold_10001	2809	2922	cpg_11852	94	+
585	scaffold_10013	1259	1349	cpg_10302	102	+
585	scaffold_10016	39	119	cpg_10196	95	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.