Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DgriCAF1 Primary Table: gc5Base Row Count: 48,202 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	scaffold_0	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	4170	`int(10) unsigned`	range
`name`	scaffold_0.13406	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	834	`int(10) unsigned`	range
`offset`	4583876	`int(10) unsigned`	range
`file`	/gbdb/DgriCAF1/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	834	`int(10) unsigned`	range
`sumData`	31840	`double`	range
`sumSquares`	1642400	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	scaffold_0	0	4170	scaffold_0.13406	5	834	4583876	/gbdb/DgriCAF1/wib/gc5Base.wib	0	100	834	31840	1642400
585	scaffold_1	0	2755	scaffold_1.11239	5	551	3092778	/gbdb/DgriCAF1/wib/gc5Base.wib	0	100	551	21220	1095600
585	scaffold_10	0	2250	scaffold_10.10462	5	450	2707083	/gbdb/DgriCAF1/wib/gc5Base.wib	0	100	450	16560	844000
585	scaffold_100	0	1470	scaffold_100.7290	5	294	1582887	/gbdb/DgriCAF1/wib/gc5Base.wib	0	100	294	11480	604800
585	scaffold_1000	0	2455	scaffold_1000.10821	5	491	2875601	/gbdb/DgriCAF1/wib/gc5Base.wib	0	100	491	18660	987600
585	scaffold_10000	0	5120	scaffold_10000.16419	5	1024	6673472	/gbdb/DgriCAF1/wib/gc5Base.wib	0	100	1024	43900	2429200
585	scaffold_10000	5120	6310	scaffold_10000.16420	5	238	6674496	/gbdb/DgriCAF1/wib/gc5Base.wib	0	100	238	10060	556400
585	scaffold_10001	0	3100	scaffold_10001.11733	5	620	3383338	/gbdb/DgriCAF1/wib/gc5Base.wib	0	100	321	14580	798600
585	scaffold_10002	0	3135	scaffold_10002.11889	5	627	3480573	/gbdb/DgriCAF1/wib/gc5Base.wib	0	100	313	9260	430800
585	scaffold_10003	0	3500	scaffold_10003.12442	5	700	3847612	/gbdb/DgriCAF1/wib/gc5Base.wib	0	100	391	11485	535425

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.