Schema for MAKER Predictions - MAKER Gene Predictions Produced by BCM

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Schema for MAKER Predictions - MAKER Gene Predictions Produced by BCM

Database: DkikGB2 Primary Table: BCM_maker Row Count: 14,165

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`name`	DKIK012763-RA	`varchar(255)`	values
`chrom`	AFFH02000335	`varchar(255)`	values
`strand`	-	`char(1)`	values
`txStart`	30917	`int(10) unsigned`	range
`txEnd`	44385	`int(10) unsigned`	range
`cdsStart`	31628	`int(10) unsigned`	range
`cdsEnd`	32186	`int(10) unsigned`	range
`exonCount`	8	`int(10) unsigned`	range
`exonStarts`	30917,33582,35398,35695,386...	`longblob`
`exonEnds`	33519,35341,35694,38637,409...	`longblob`

Sample Rows

bin	name	chrom	strand	txStart	txEnd	cdsStart	cdsEnd	exonCount	exonStarts	exonEnds
585	DKIK012763-RA	AFFH02000335	-	30917	44385	31628	32186	8	30917,33582,35398,35695,38638,40997,43269,43697,	33519,35341,35694,38637,40996,43268,43696,44385,
585	DKIK012764-RA	AFFH02000335	+	45223	49851	48706	49851	3	45223,49060,49668,	48997,49609,49851,
585	DKIK012765-RA	AFFH02000335	+	52813	56086	53011	55651	2	52813,55024,	54934,56086,
585	DKIK012766-RA	AFFH02000335	+	56682	58251	56682	58248	2	56682,58115,	56729,58251,
585	DKIK012767-RA	AFFH02000335	+	59732	73374	59930	72726	12	59732,60700,60943,61628,63224,64873,65637,67284,67489,70657,70871,71728,	60640,60855,61570,62108,63313,65570,66144,67428,67883,70847,71670,73374,
585	DKIK012768-RA	AFFH02000335	-	68143	70056	68146	70056	7	68143,68306,68573,68906,69421,69575,69983,	68210,68517,68851,69361,69517,69928,70056,
585	DKIK012770-RA	AFFH02000335	-	73623	90859	76367	84326	6	73623,77736,80840,83724,84276,90613,	77143,78703,81016,83999,90612,90859,
585	DKIK012769-RA	AFFH02000335	+	73623	77826	73835	74268	2	73623,74134,	74070,77826,
585	DKIK012771-RA	AFFH02000335	+	81322	85890	84744	85887	3	81322,81898,85069,	81897,85015,85890,
585	DKIK012772-RA	AFFH02000335	+	86141	90304	86718	89870	5	86141,87705,89167,89377,89660,	86776,89105,89317,89599,90304,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

MAKER Predictions (BCM_maker) Track Description


	Description This track shows the MAKER annotations produced by the Baylor College of Medicine Human Genome Sequencing Center (BCM-HGSC) as part of the modENCODE project. The MAKER annotations are available for download through the BCM-HGSC FTP site. The MAKER annotations are lifted from the original version 2 assembly onto the current GenBank assembly using BLAT. References Holt C, Yandell M. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics. 2011 Dec 22;12:491. Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.