Schema for Gap - Gap Locations

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Schema for Gap - Gap Locations

Database: DkikGB2 Primary Table: gap Row Count: 3,202

field	example	SQL type	info
`bin`	585	`smallint(6)`	range
`chrom`	KB458682	`varchar(255)`	values
`chromStart`	1008	`int(10) unsigned`	range
`chromEnd`	1028	`int(10) unsigned`	range
`ix`	2	`int(11)`	range
`n`	N	`char(1)`	values
`size`	20	`int(10) unsigned`	range
`type`	scaffold	`varchar(255)`	values
`bridge`	yes	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	ix	n	size	type	bridge
585	KB458682	1008	1028	2	N	20	scaffold	yes
585	KB458683	965	1854	2	N	889	scaffold	yes
585	KB458683	5855	5875	4	N	20	scaffold	yes
585	KB458684	1886	2547	2	N	661	scaffold	yes
585	KB458685	1359	2233	2	N	874	scaffold	yes
585	KB458686	1712	2997	2	N	1285	scaffold	yes
585	KB458686	3914	3934	4	N	20	scaffold	yes
585	KB458687	24985	25005	2	N	20	scaffold	yes
585	KB458688	119287	119486	2	N	199	scaffold	yes
585	KB458689	804	1782	2	N	978	scaffold	yes

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Gap (gap) Track Description


	Description This track depicts gaps — represented by black boxes — in the D. kikkawai genome sequence. An assembly region is designated as a gap if the sequence contains a series of Ns. The minimum number of Ns that constitute a gap varies among assemblies.