Schema for GC Percent - GC Percent in 5-Base Windows

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for GC Percent - GC Percent in 5-Base Windows

Database: DkikGB2 Primary Table: gc5Base Row Count: 35,364

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFH02000003	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	1095	`int(10) unsigned`	range
`name`	AFFH02000003.1	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	219	`int(10) unsigned`	range
`offset`	725	`int(10) unsigned`	range
`file`	/gbdb/DkikGB2/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	219	`int(10) unsigned`	range
`sumData`	7280	`double`	range
`sumSquares`	355200	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	AFFH02000003	0	1095	AFFH02000003.1	5	219	725	/gbdb/DkikGB2/wib/gc5Base.wib	0	100	219	7280	355200
585	AFFH02000009	0	1080	AFFH02000009.7	5	216	4863	/gbdb/DkikGB2/wib/gc5Base.wib	0	100	216	12880	855200
585	AFFH02000010	0	1060	AFFH02000010.8	5	212	5079	/gbdb/DkikGB2/wib/gc5Base.wib	0	100	212	12560	827200
585	AFFH02000011	0	1090	AFFH02000011.9	5	218	5291	/gbdb/DkikGB2/wib/gc5Base.wib	0	100	218	11280	686400
585	AFFH02000012	0	1110	AFFH02000012.10	5	222	5509	/gbdb/DkikGB2/wib/gc5Base.wib	0	100	222	7740	387600
585	AFFH02000013	0	1045	AFFH02000013.11	5	209	5731	/gbdb/DkikGB2/wib/gc5Base.wib	0	100	209	10020	570800
585	AFFH02000021	0	1005	AFFH02000021.21	5	201	13744	/gbdb/DkikGB2/wib/gc5Base.wib	0	100	201	8460	457200
585	AFFH02000022	0	1000	AFFH02000022.22	5	200	13945	/gbdb/DkikGB2/wib/gc5Base.wib	0	80	200	8380	441200
585	AFFH02000023	0	1455	AFFH02000023.23	5	291	14145	/gbdb/DkikGB2/wib/gc5Base.wib	0	100	291	10160	505600
585	AFFH02000026	0	1695	AFFH02000026.62	5	339	53045	/gbdb/DkikGB2/wib/gc5Base.wib	0	100	339	11520	551200

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.