Schema for modENCODE TransDecoder Transcripts - D. kikkawai TransDecoder Transcripts from modENCODE RNA-Seq |
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Database: DkikGB2 Primary Table: modencode_transdecoder Row Count: 23,607
| field | example | SQL type | info |
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| bin | 585 | smallint(5) unsigned | range |
| name | DkikGB2_eggs_CUFF.2.1_m.9 | varchar(255) | values |
| chrom | AFFH02000038 | varchar(255) | values |
| strand | - | char(1) | values |
| txStart | 1 | int(10) unsigned | range |
| txEnd | 1343 | int(10) unsigned | range |
| cdsStart | 10 | int(10) unsigned | range |
| cdsEnd | 988 | int(10) unsigned | range |
| exonCount | 1 | int(10) unsigned | range |
| exonStarts | 1, | longblob | |
| exonEnds | 1343, | longblob | |
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Sample Rows
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| bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds |
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| 585 | DkikGB2_eggs_CUFF.2.1_m.9 | AFFH02000038 | - | 1 | 1343 | 10 | 988 | 1 | 1, | 1343, |
| 585 | DkikGB2_eggs_CUFF.3.1_m.5 | AFFH02000038 | - | 1435 | 2472 | 1649 | 1898 | 1 | 1435, | 2472, |
| 585 | DkikGB2_eggs_CUFF.4.1_m.14 | AFFH02000049 | + | 322 | 2923 | 2019 | 2712 | 1 | 322, | 2923, |
| 585 | DkikGB2_eggs_CUFF.6.1_m.26 | AFFH02000075 | - | 0 | 1031 | 837 | 1029 | 1 | 0, | 1031, |
| 585 | DkikGB2_eggs_CUFF.7.1_m.30 | AFFH02000088 | - | 4 | 1235 | 16 | 217 | 1 | 4, | 1235, |
| 585 | DkikGB2_eggs_CUFF.11.1_m.34 | AFFH02000113 | + | 38 | 1339 | 196 | 550 | 1 | 38, | 1339, |
| 585 | DkikGB2_eggs_CUFF.12.1_m.43 | AFFH02000126 | + | 30 | 774 | 153 | 420 | 1 | 30, | 774, |
| 585 | DkikGB2_eggs_CUFF.14.1_m.50 | AFFH02000148 | + | 25 | 1012 | 26 | 488 | 1 | 25, | 1012, |
| 585 | DkikGB2_females_CUFF.1.1_m.1 | AFFH02000153 | + | 34 | 876 | 36 | 375 | 1 | 34, | 876, |
| 585 | DkikGB2_eggs_CUFF.21.1_m.76 | AFFH02000164 | - | 300 | 779 | 302 | 518 | 1 | 300, | 779, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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modENCODE TransDecoder Transcripts (modencode_transdecoder) Track Description
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