Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

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Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DkikGB2 Primary Table: microsat Row Count: 277 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFH02000593	`varchar(255)`	values
`chromStart`	2242	`int(10) unsigned`	range
`chromEnd`	2272	`int(10) unsigned`	range
`name`	15xTG	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	AFFH02000593	2242	2272	15xTG
585	AFFH02000799	1110	1144	17xTA
585	AFFH02000832	7560	7622	20xAAT
585	AFFH02001023	28	63	17xTA
585	AFFH02004796	227	258	15xAT
585	AFFH02004950	6688	6718	15xTC
585	AFFH02005556	1740	1794	27xAT
585	AFFH02005665	6032	6073	20xGA
585	AFFH02005872	1660	1699	19xAT
585	AFFH02006165	120482	120517	17xAG

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217