Schema for rRNA Genes - Ribosomal RNA Genes Identified by RNAmmer

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Database: DmirGB2 Primary Table: RNAmmer Row Count: 5 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	743	`smallint(5) unsigned`	range
`chrom`	CM001518	`varchar(255)`	values
`chromStart`	20833071	`int(10) unsigned`	range
`chromEnd`	20833198	`int(10) unsigned`	range
`name`	RNAmmer_8s_rRNA_1	`varchar(255)`	values
`score`	77	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`hmmScore`	77	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	hmmScore
743	CM001518	20833071	20833198	RNAmmer_8s_rRNA_1	77	-	77
715	CM001519	17123614	17123729	RNAmmer_8s_rRNA_2	76	-	76.4
693	CM001520	14213516	14213631	RNAmmer_8s_rRNA_3	77	-	77.5
693	CM001520	14214486	14214601	RNAmmer_8s_rRNA_4	77	-	77.5
693	CM001520	14214919	14215034	RNAmmer_8s_rRNA_5	77	-	77.5

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

rRNA Genes (RNAmmer) Track Description


	Description This track shows the rRNA gene predictions produced by RNAmmer using the parameters: `-S euk -m lsu,ssu,tsu`. References Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007;35(9):3100-8.

Description