Schema for GlimmerHMM - GlimmerHMM Gene Predictions
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Database: DmirGB2 Primary Table: glimmer Row Count: 20,096   Data last updated: 2022-10-20
field | example | SQL type | info |
bin | 585 | smallint(5) unsigned | range |
name | CM001516.path1.gene1 | varchar(255) | values |
chrom | CM001516 | varchar(255) | values |
strand | - | char(1) | values |
txStart | 4412 | int(10) unsigned | range |
txEnd | 7679 | int(10) unsigned | range |
cdsStart | 4412 | int(10) unsigned | range |
cdsEnd | 7679 | int(10) unsigned | range |
exonCount | 5 | int(10) unsigned | range |
exonStarts | 4412,6174,7006,7216,7335, | longblob | |
exonEnds | 4928,6276,7108,7274,7679, | longblob | |
score | 0 | int(11) | range |
name2 | CM001516.path1.gene1 | varchar(255) | values |
cdsStartStat | unk | enum('none', 'unk', 'incmpl', 'cmpl') | values |
cdsEndStat | unk | enum('none', 'unk', 'incmpl', 'cmpl') | values |
exonFrames | 0,0,0,2,0, | longblob | |
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Sample Rows
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bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds | score | name2 | cdsStartStat | cdsEndStat | exonFrames |
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585 | CM001516.path1.gene1 | CM001516 | - | 4412 | 7679 | 4412 | 7679 | 5 | 4412,6174,7006,7216,7335, | 4928,6276,7108,7274,7679, | 0 | CM001516.path1.gene1 | unk | unk | 0,0,0,2,0, |
585 | CM001516.path1.gene2 | CM001516 | - | 11382 | 12056 | 11382 | 12056 | 3 | 11382,11573,11895, | 11510,11728,12056, | 0 | CM001516.path1.gene2 | unk | unk | 1,2,0, |
585 | CM001516.path1.gene3 | CM001516 | + | 15164 | 16516 | 15164 | 16516 | 5 | 15164,15402,16029,16218,16382, | 15293,15552,16158,16324,16516, | 0 | CM001516.path1.gene3 | unk | unk | 0,0,0,0,1, |
585 | CM001516.path1.gene4 | CM001516 | + | 18571 | 18873 | 18571 | 18873 | 2 | 18571,18747, | 18640,18873, | 0 | CM001516.path1.gene4 | unk | unk | 0,0, |
585 | CM001516.path1.gene5 | CM001516 | - | 20907 | 23850 | 20907 | 23850 | 3 | 20907,21338,23184, | 21137,21486,23850, | 0 | CM001516.path1.gene5 | unk | unk | 1,0,0, |
585 | CM001516.path1.gene6 | CM001516 | + | 26017 | 29360 | 26017 | 29360 | 3 | 26017,26512,29252, | 26439,28247,29360, | 0 | CM001516.path1.gene6 | unk | unk | 0,2,0, |
585 | CM001516.path1.gene7 | CM001516 | - | 32386 | 43296 | 32386 | 43296 | 7 | 32386,37095,39589,40462,41475,42560,43293, | 32663,37225,39770,40852,41599,43282,43296, | 0 | CM001516.path1.gene7 | unk | unk | 2,1,0,0,2,0,0, |
585 | CM001516.path1.gene8 | CM001516 | + | 45486 | 46843 | 45486 | 46843 | 4 | 45486,45701,46139,46539, | 45531,45756,46485,46843, | 0 | CM001516.path1.gene8 | unk | unk | 0,0,1,2, |
585 | CM001516.path1.gene9 | CM001516 | - | 49709 | 49865 | 49709 | 49865 | 1 | 49709, | 49865, | 0 | CM001516.path1.gene9 | unk | unk | 0, |
585 | CM001516.path1.gene10 | CM001516 | + | 51926 | 56387 | 51926 | 56387 | 3 | 51926,53486,56000, | 52004,53888,56387, | 0 | CM001516.path1.gene10 | unk | unk | 0,0,0, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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GlimmerHMM (glimmer) Track Description
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