Schema for Tallymer - Repetitive Regions Identified by Tallymer

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Database: DmirGB2 Primary Table: tallymer Data last updated: 2017-08-06
Big Bed File: /gbdb/DmirGB2/bbi/DmirGB2.tallymer.bb
Item Count: 45,188
Format description: Browser Extensible Data

field	example	description
`chrom`	CM001516	Reference sequence chromosome or scaffold
`chromStart`	14769834	Start position in chromosome
`chromEnd`	14770145	End position in chromosome
`name`	tallymer_58742	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
CM001516	14769834	14770145	tallymer_58742
CM001516	14770148	14770197	tallymer_58743
CM001516	14777204	14777257	tallymer_58757
CM001516	14779970	14780033	tallymer_58764
CM001516	14784605	14784654	tallymer_58775
CM001516	14796944	14796991	tallymer_58801
CM001516	14800235	14800287	tallymer_58807
CM001516	14804964	14805006	tallymer_58817
CM001516	14805201	14805244	tallymer_58818
CM001516	14805281	14805323	tallymer_58819

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. miranda genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References