Schema for GC Percent - GC Percent in 5-Base Windows

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for GC Percent - GC Percent in 5-Base Windows

Database: DmojCAF1 Primary Table: gc5Base Row Count: 40,175 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	scaffold_0	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5120	`int(10) unsigned`	range
`name`	scaffold_0.7193	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	1024	`int(10) unsigned`	range
`offset`	3225547	`int(10) unsigned`	range
`file`	/gbdb/DmojCAF1/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	1024	`int(10) unsigned`	range
`sumData`	38160	`double`	range
`sumSquares`	2011200	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	scaffold_0	0	5120	scaffold_0.7193	5	1024	3225547	/gbdb/DmojCAF1/wib/gc5Base.wib	0	100	1024	38160	2011200
585	scaffold_0	5120	8995	scaffold_0.7194	5	775	3226571	/gbdb/DmojCAF1/wib/gc5Base.wib	0	100	775	34100	1852400
585	scaffold_1	0	1175	scaffold_1.1449	5	235	288976	/gbdb/DmojCAF1/wib/gc5Base.wib	0	100	235	7780	404400
585	scaffold_10	0	1500	scaffold_10.3000	5	300	699490	/gbdb/DmojCAF1/wib/gc5Base.wib	0	100	300	11460	591600
585	scaffold_100	0	1890	scaffold_100.3843	5	378	980811	/gbdb/DmojCAF1/wib/gc5Base.wib	0	100	378	15540	849200
585	scaffold_1000	0	1545	scaffold_1000.3132	5	309	739639	/gbdb/DmojCAF1/wib/gc5Base.wib	0	100	309	14560	868800
585	scaffold_1001	0	1160	scaffold_1001.1350	5	232	265865	/gbdb/DmojCAF1/wib/gc5Base.wib	0	100	232	10780	626000
585	scaffold_1002	0	2105	scaffold_1002.4051	5	421	1063394	/gbdb/DmojCAF1/wib/gc5Base.wib	0	80	421	11960	488000
585	scaffold_1003	0	985	scaffold_1003.464	5	197	75029	/gbdb/DmojCAF1/wib/gc5Base.wib	0	100	197	9880	610400
585	scaffold_1004	0	1085	scaffold_1004.938	5	217	173494	/gbdb/DmojCAF1/wib/gc5Base.wib	0	100	217	8860	498000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.