Schema for TransDecoder Transcripts - Transcripts and Coding Regions Predicted by TransDecoder
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Database: DmojCAF1 Primary Table: transdecoder Row Count: 25,053   Data last updated: 2022-10-20
field | example | SQL type | info |
bin | 585 | smallint(5) unsigned | range |
name | DmojCAF1_stringtie.2.1_m.4 | varchar(255) | values |
chrom | scaffold_1007 | varchar(255) | values |
strand | - | char(1) | values |
txStart | 23 | int(10) unsigned | range |
txEnd | 1321 | int(10) unsigned | range |
cdsStart | 25 | int(10) unsigned | range |
cdsEnd | 985 | int(10) unsigned | range |
exonCount | 1 | int(10) unsigned | range |
exonStarts | 23, | longblob | |
exonEnds | 1321, | longblob | |
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Sample Rows
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bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds |
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585 | DmojCAF1_stringtie.2.1_m.4 | scaffold_1007 | - | 23 | 1321 | 25 | 985 | 1 | 23, | 1321, |
585 | DmojCAF1_stringtie.3.1_m.5 | scaffold_1008 | - | 281 | 946 | 282 | 945 | 1 | 281, | 946, |
585 | DmojCAF1_stringtie.11.1_m.14 | scaffold_1118 | - | 2095 | 5989 | 3527 | 5987 | 2 | 2095,3249, | 2131,5989, |
585 | DmojCAF1_stringtie.13.1_m.18 | scaffold_1121 | - | 57 | 451 | 59 | 450 | 2 | 57,404, | 334,451, |
585 | DmojCAF1_stringtie.14.1_m.19 | scaffold_1158 | + | 0 | 1518 | 0 | 1518 | 2 | 0,457, | 337,1518, |
585 | DmojCAF1_stringtie.18.1_m.21 | scaffold_1277 | + | 1 | 595 | 3 | 393 | 2 | 1,151, | 85,595, |
585 | DmojCAF1_stringtie.21.6_m.45 | scaffold_1287 | + | 0 | 1391 | 1 | 1390 | 2 | 0,979, | 127,1391, |
585 | DmojCAF1_stringtie.21.1_m.27 | scaffold_1287 | + | 0 | 1391 | 1 | 1390 | 2 | 0,1354, | 289,1391, |
585 | DmojCAF1_stringtie.21.2_m.24 | scaffold_1287 | + | 0 | 1391 | 1 | 1390 | 2 | 0,1075, | 436,1391, |
585 | DmojCAF1_stringtie.21.3_m.33 | scaffold_1287 | + | 0 | 1391 | 1 | 1390 | 4 | 0,415,1075,1354, | 202,436,1141,1391, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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TransDecoder Transcripts (transdecoder) Track Description
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