Schema for Tallymer - Repetitive Regions Identified by Tallymer

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Database: DmojCAF1 Primary Table: tallymer Data last updated: 2018-02-23
Big Bed File: /gbdb/DmojCAF1/bbi/DmojCAF1.tallymer.bb
Item Count: 201,436
Format description: Browser Extensible Data

field	example	description
`chrom`	scaffold_0	Reference sequence chromosome or scaffold
`chromStart`	0	Start position in chromosome
`chromEnd`	68	End position in chromosome
`name`	tallymer_334970	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
scaffold_0	0	68	tallymer_334970
scaffold_0	71	355	tallymer_334971
scaffold_0	398	530	tallymer_334972
scaffold_0	672	770	tallymer_334976
scaffold_0	837	887	tallymer_334978
scaffold_0	931	1048	tallymer_334979
scaffold_0	1049	1109	tallymer_334980
scaffold_0	1176	1279	tallymer_334982
scaffold_0	1329	1435	tallymer_334984
scaffold_0	1436	1853	tallymer_334985

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. mojavensis genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References