Schema for DmojWGS Chain - DmojWGS (DmojWGS) Chained Alignments

Database: DmojImproved Primary Table: chainDmojWGS Row Count: 1,569,071 Data last updated: 2023-08-05

Sample Rows

bin	score	tName	tSize	tStart	tEnd	qName	qSize	qStrand	qStart	qEnd	id
9	288055679	improved_6498	3406532	0	3406532	scaffold_6498	3408170	-	0	3408170	9
585	101574	improved_6498	3406532	4466	5548	scaffold_6413	43472	+	2637	3717	196688
585	61093	improved_6498	3406532	4607	5324	scaffold_1960	24253	+	20979	21698	425967
585	239939	improved_6498	3406532	4607	7451	scaffold_5163	4609	+	1703	4596	37069
585	69204	improved_6498	3406532	4607	5413	scaffold_6541	2543558	+	611275	612083	368807
585	148081	improved_6498	3406532	4608	6302	scaffold_6320	123131	+	118540	120281	92726
585	37537	improved_6498	3406532	4608	5037	scaffold_2481	7442	+	3482	3915	656536
585	67606	improved_6498	3406532	4608	5390	scaffold_6336	81854	-	41133	41916	379656
585	38660	improved_6498	3406532	4608	5051	scaffold_181	3991	+	442	890	643714
585	279008	improved_6498	3406532	4608	85807	scaffold_6498	3408170	+	2189037	2227429	26682

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

DmojWGS Chain (chainDmojWGS) Track Description


	Description Genomic scaffolds from the D. mojavensis Comparative Analysis Freeze 1 (CAF1) assembly were aligned against the improved D. mojavensis assembly produced by the Genomics Education Partnership using LAST with default parameters. The alignments are then chained together using the UCSC whole genome alignment protocol. References Chain/Net Kent WJ, Baertsch R, Hinrichs A, Miller W, and Haussler D. Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci USA 2003 100(20): 11484-11489. LAST Kielbasa SM, Wan R, Sato K, Horton P, Frith MC. Adaptive seeds tame genomic sequence comparison. Genome Res. 2011 Mar;21(3):487-93.

Description