Schema for Non-coding RNAs - FlyBase Non-coding RNAs

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for Non-coding RNAs - FlyBase Non-coding RNAs

Database: DmojImproved Primary Table: flybase_tRNA Row Count: 318

field	example	SQL type	info
`bin`	593	`smallint(5) unsigned`	range
`chrom`	improved_6498	`varchar(255)`	values
`chromStart`	1169487	`int(10) unsigned`	range
`chromEnd`	1169560	`int(10) unsigned`	range
`name`	FBtr0293220	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`thickStart`	1169487	`int(10) unsigned`	range
`thickEnd`	1169560	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`blockCount`	1	`int(10) unsigned`	range
`blockSizes`	73,	`longblob`
`chromStarts`	0,	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts
593	improved_6498	1169487	1169560	FBtr0293220	1000	+	1169487	1169560	0	1	73,	0,
585	improved_6680	87640	87713	FBtr0293327	1000	-	87640	87713	0	1	73,	0,
585	improved_6680	103548	103643	FBtr0293328	1000	-	103548	103643	0	2	34,40,	0,55,
585	improved_6680	103548	103643	FBtr0293335	1000	-	103548	103643	0	2	34,40,	0,55,
592	improved_6680	971052	971125	FBtr0293329	1000	+	971052	971125	0	1	73,	0,
592	improved_6680	995688	995760	FBtr0293332	1000	-	995688	995760	0	1	72,	0,
592	improved_6680	995688	995760	FBtr0293330	1000	-	995688	995760	0	1	72,	0,
592	improved_6680	995688	995760	FBtr0293331	1000	-	995688	995760	0	1	72,	0,
592	improved_6680	995688	995760	FBtr0293333	1000	-	995688	995760	0	1	72,	0,
592	improved_6680	996244	996316	FBtr0293332	1000	-	996244	996316	0	1	72,	0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Non-coding RNAs (flybase_ncRNA) Track Description


	Description This track shows the non-coding RNA annotations for D. mojavensis that were generated by the Drosophila 12 Genomes Consortium. The annotations are available for download at FlyBase. References The D. mojavensis non-coding RNAs are available for download at FlyBase Drosophila 12 Genomes Consortium. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450, 203-218 (8 November 2007)