Schema for GLEAN-R Alignments - Alignment of GLEAN-R Predictions from Other Drosophila species

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Schema for GLEAN-R Alignments - Alignment of GLEAN-R Predictions from Other Drosophila species

Database: DmojImproved Primary Table: gleanr_dmoj Row Count: 13,821

field	example	SQL type	info
`bin`	586	`smallint(5) unsigned`	range
`chrom`	improved_6498	`varchar(255)`	values
`chromStart`	247301	`int(10) unsigned`	range
`chromEnd`	248525	`int(10) unsigned`	range
`name`	FBpp0163361	`varchar(255)`	values
`score`	2275	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	247301	`int(10) unsigned`	range
`thickEnd`	248525	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`blockCount`	1	`int(10) unsigned`	range
`blockSizes`	1224,	`longblob`
`chromStarts`	0	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts
586	improved_6498	247301	248525	FBpp0163361	2275	-	247301	248525	0	1	1224,	0
587	improved_6498	386506	389076	FBpp0163360	4169	-	386506	389076	0	4	679,1434,90,146,	0,773,2275,2424
588	improved_6498	413801	424210	FBpp0163225	3462	+	413801	424210	0	13	98,241,166,182,153,498,383,133,138,281,160,159,225,	0,1252,1790,2017,6899,7212,8581,9021,9211,9406,9739,9954,10184
588	improved_6498	428183	430251	FBpp0163226	2939	+	428183	430251	0	4	126,512,378,712,	0,350,919,1356
588	improved_6498	454503	469737	FBpp0163359	3969	-	454503	469737	0	3	167,926,1241,	0,222,13993
73	improved_6498	473751	551969	FBpp0163227	1268	+	473751	551969	0	6	49,172,48,97,319,68,	0,55445,58691,77579,77756,78150
589	improved_6498	591537	592209	FBpp0163357	1246	-	591537	592209	0	1	672,	0
589	improved_6498	621648	622172	FBpp0163356	867	-	621648	622172	0	2	274,200,	0,324
589	improved_6498	639396	640007	FBpp0163228	949	+	639396	640007	0	3	137,195,169,	0,191,442
589	improved_6498	640106	640628	FBpp0163355	834	-	640106	640628	0	2	297,162,	0,360

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GLEAN-R Alignments (gleanr_drosophila) Track Description


	Description This track shows the SPALN alignment of GLEAN-R predictions from different Drosophila species against the genome. The GLEAN-R predictions were originally generated by the Drosophila 12 Genomes Consortium and are currently maintained by FlyBase. References GLEAN-R gene predictions are available for download at FlyBase Drosophila 12 Genomes Consortium. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450, 203-218 (8 November 2007) Iwata H., and Gotoh, O. Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features. Nucleic Acids Research. 2012, 109