Schema for GLEAN-R Alignments - Alignment of GLEAN-R Predictions from Other Drosophila species

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Schema for GLEAN-R Alignments - Alignment of GLEAN-R Predictions from Other Drosophila species

Database: DmojImproved Primary Table: gleanr_dvir Row Count: 12,347

field	example	SQL type	info
`bin`	586	`smallint(5) unsigned`	range
`chrom`	improved_6498	`varchar(255)`	values
`chromStart`	135301	`int(10) unsigned`	range
`chromEnd`	254610	`int(10) unsigned`	range
`name`	FBpp0225619	`varchar(255)`	values
`score`	231	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	135301	`int(10) unsigned`	range
`thickEnd`	254610	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`blockCount`	4	`int(10) unsigned`	range
`blockSizes`	35,273,187,63,	`longblob`
`chromStarts`	0,1437,114392,119246	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts
586	improved_6498	135301	254610	FBpp0225619	231	-	135301	254610	0	4	35,273,187,63,	0,1437,114392,119246
586	improved_6498	188019	196867	FBpp0234008	512	-	188019	196867	0	3	981,163,36,	0,1903,8812
587	improved_6498	371578	379264	FBpp0229349	298	+	371578	379264	0	2	75,690,	0,6996
587	improved_6498	386506	389076	FBpp0233494	3747	-	386506	389076	0	4	679,1434,90,146,	0,773,2275,2424
588	improved_6498	409748	424210	FBpp0233496	3492	+	409748	424210	0	11	7,182,153,498,383,133,138,281,160,159,225,	0,6070,10952,11265,12634,13074,13264,13459,13792,14007,14237
588	improved_6498	419801	430251	FBpp0233497	2356	+	419801	430251	0	5	15,342,512,378,712,	0,8151,8732,9301,9738
588	improved_6498	454503	469737	FBpp0233499	3114	-	454503	469737	0	3	167,926,1241,	0,222,13993
589	improved_6498	614328	622172	FBpp0233503	622	-	614328	622172	0	3	18,223,200,	0,7371,7644
589	improved_6498	639396	640007	FBpp0233487	850	+	639396	640007	0	3	137,195,169,	0,191,442
589	improved_6498	640106	640661	FBpp0233505	758	-	640106	640661	0	2	297,195,	0,360

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GLEAN-R Alignments (gleanr_drosophila) Track Description


	Description This track shows the SPALN alignment of GLEAN-R predictions from different Drosophila species against the genome. The GLEAN-R predictions were originally generated by the Drosophila 12 Genomes Consortium and are currently maintained by FlyBase. References GLEAN-R gene predictions are available for download at FlyBase Drosophila 12 Genomes Consortium. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450, 203-218 (8 November 2007) Iwata H., and Gotoh, O. Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features. Nucleic Acids Research. 2012, 109