Schema for GLEAN-R Alignments - Alignment of GLEAN-R Predictions from Other Drosophila species

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Schema for GLEAN-R Alignments - Alignment of GLEAN-R Predictions from Other Drosophila species

Database: DmojImproved Primary Table: gleanr_dyak Row Count: 11,637

field	example	SQL type	info
`bin`	73	`smallint(5) unsigned`	range
`chrom`	improved_6498	`varchar(255)`	values
`chromStart`	97781	`int(10) unsigned`	range
`chromEnd`	252418	`int(10) unsigned`	range
`name`	FBpp0262151	`varchar(255)`	values
`score`	1032	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`thickStart`	97781	`int(10) unsigned`	range
`thickEnd`	252418	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`blockCount`	6	`int(10) unsigned`	range
`blockSizes`	17,208,211,128,173,280,	`longblob`
`chromStarts`	0,136,83409,115307,145454,1...	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts
73	improved_6498	97781	252418	FBpp0262151	1032	+	97781	252418	0	6	17,208,211,128,173,280,	0,136,83409,115307,145454,154357
587	improved_6498	386506	389076	FBpp0261155	3578	-	386506	389076	0	4	679,1434,90,146,	0,773,2275,2424
588	improved_6498	411768	424210	FBpp0262111	3123	+	411768	424210	0	14	55,202,103,85,179,153,498,383,133,138,281,160,159,225,	0,1929,2212,2378,4053,8932,9245,10614,11054,11244,11439,11772,11987,12217
588	improved_6498	427995	430251	FBpp0262112	1310	+	427995	430251	0	5	6,237,512,378,712,	0,62,538,1107,1544
588	improved_6498	454503	469737	FBpp0261154	2523	-	454503	469737	0	3	167,926,1241,	0,222,13993
589	improved_6498	620854	622172	FBpp0262158	595	-	620854	622172	0	3	15,241,200,	0,827,1118
589	improved_6498	639396	640007	FBpp0261121	828	+	639396	640007	0	3	137,195,169,	0,191,442
589	improved_6498	640106	640943	FBpp0262157	655	-	640106	640943	0	4	297,234,99,12,	0,360,668,825
590	improved_6498	689502	692221	FBpp0261122	1716	-	689502	692221	0	2	1545,1110,	0,1609
591	improved_6498	793174	840563	FBpp0262313	3760	+	793174	840563	0	11	132,133,43,118,166,279,137,186,1488,257,148,	0,716,6543,33881,34102,34326,34666,34855,44903,46926,47241

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GLEAN-R Alignments (gleanr_drosophila) Track Description


	Description This track shows the SPALN alignment of GLEAN-R predictions from different Drosophila species against the genome. The GLEAN-R predictions were originally generated by the Drosophila 12 Genomes Consortium and are currently maintained by FlyBase. References GLEAN-R gene predictions are available for download at FlyBase Drosophila 12 Genomes Consortium. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450, 203-218 (8 November 2007) Iwata H., and Gotoh, O. Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features. Nucleic Acids Research. 2012, 109