Schema for Assembly Notes - GEP Sequence Improvement Notes

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Schema for Assembly Notes - GEP Sequence Improvement Notes

Database: DmojImproved Primary Table: finishing_notes Row Count: 6

field	example	SQL type	info
`chrom`	improved_6498	`varchar(255)`	values
`chromStart`	1521016	`int(10) unsigned`	range
`chromEnd`	1521020	`int(10) unsigned`	range
`name`	finishing_improved_6498_note_1	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`id`	finishing_improved_6498_note_1	`varchar(255)`	values
`description`	Unresolved GTCT simple sequ...	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	id	description
improved_6498	1521016	1521020	finishing_improved_6498_note_1	1000	+	finishing_improved_6498_note_1	Unresolved GTCT simple sequence repeat
improved_6498	1521599	1521802	finishing_improved_6498_note_2	1000	+	finishing_improved_6498_note_2	Putative insert polymorphism in fosmid 455J01 compared to 465C16 and 450M05
improved_6498	1681793	1681794	finishing_improved_6498_note_3	1000	+	finishing_improved_6498_note_3	Unresolved simple sequence repeat
improved_6498	2072983	2072985	finishing_improved_6498_note_4	1000	+	finishing_improved_6498_note_4	Unresolved AT simple sequence repeat
improved_6498	2632609	2632710	finishing_improved_6498_note_5	1000	+	finishing_improved_6498_note_5	Unresolved AT simple sequence repeat
improved_6498	2637674	2637769	finishing_improved_6498_note_6	1000	+	finishing_improved_6498_note_6	Unresolved AT simple sequence repeat

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Assembly Notes (finishing_notes) Track Description


	Description This track contains additional notes for the improved sequence produced by the GEP.