Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DmojImproved Primary Table: gc5Base Row Count: 40,175

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	improved_6498	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5120	`int(10) unsigned`	range
`name`	improved_6498.0	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	1024	`int(10) unsigned`	range
`offset`	0	`int(10) unsigned`	range
`file`	/gbdb/DmojImproved/wib/gc5B...	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	1020	`int(10) unsigned`	range
`sumData`	49845	`double`	range
`sumSquares`	2971420	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	improved_6498	0	5120	improved_6498.0	5	1024	0	/gbdb/DmojImproved/wib/gc5Base.wib	0	100	1020	49845	2971420
585	improved_6498	5120	10240	improved_6498.1	5	1024	1024	/gbdb/DmojImproved/wib/gc5Base.wib	0	100	1000	48980	2906800
585	improved_6498	10240	15360	improved_6498.2	5	1024	2048	/gbdb/DmojImproved/wib/gc5Base.wib	0	100	1016	49495	2902820
585	improved_6498	15360	17520	improved_6498.3	5	432	3072	/gbdb/DmojImproved/wib/gc5Base.wib	0	100	432	21460	1260400
585	improved_6498	47810	52930	improved_6498.4	5	1024	3504	/gbdb/DmojImproved/wib/gc5Base.wib	0	100	864	31306.7	1634850
585	improved_6498	52930	58050	improved_6498.5	5	1024	4528	/gbdb/DmojImproved/wib/gc5Base.wib	0	100	1020	37763.3	1954010
585	improved_6498	58050	63170	improved_6498.6	5	1024	5552	/gbdb/DmojImproved/wib/gc5Base.wib	0	100	1024	39340	2042000
585	improved_6498	63170	65055	improved_6498.7	5	377	6576	/gbdb/DmojImproved/wib/gc5Base.wib	0	100	377	14940	807600
585	improved_6498	69100	74220	improved_6498.8	5	1024	6953	/gbdb/DmojImproved/wib/gc5Base.wib	0	100	1024	35580	1728400
585	improved_6498	74220	79340	improved_6498.9	5	1024	7977	/gbdb/DmojImproved/wib/gc5Base.wib	0	100	1024	38280	1979200

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different aspects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.