Schema for GEP Fosmids - Fosmid Projects Improved by the GEP

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Schema for GEP Fosmids - Fosmid Projects Improved by the GEP

Database: DmojImproved Primary Table: gep_fosmids Row Count: 103

field	example	SQL type	info
`bin`	595	`smallint(5) unsigned`	range
`chrom`	improved_6498	`varchar(255)`	values
`chromStart`	1379276	`int(10) unsigned`	range
`chromEnd`	1417602	`int(10) unsigned`	range
`name`	485B16	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	1379276	`int(10) unsigned`	range
`thickEnd`	1417602	`int(10) unsigned`	range
`itemRgb`	0	`int(10) unsigned`	range
`blockCount`	1	`int(10) unsigned`	range
`blockSizes`	38326,	`longblob`
`chromStarts`	0,	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	itemRgb	blockCount	blockSizes	chromStarts
595	improved_6498	1379276	1417602	485B16	1000	-	1379276	1417602	0,0,0	1	38326,	0,
74	improved_6498	1403530	1446420	480D14	1000	+	1403530	1446420	0,0,0	1	42890,	0,
74	improved_6498	1432327	1471633	475L12	1000	-	1432327	1471633	0,0,0	1	39306,	0,
596	improved_6498	1456333	1495347	470O16	1000	-	1456333	1495347	0,0,0	1	39014,	0,
596	improved_6498	1484212	1526701	465C16	1000	-	1484212	1526701	34,94,168	4	37342,40,5,4899,	0,37342,37382,37590,
596	improved_6498	1505129	1544237	455J01	1000	-	1505129	1544237	34,94,168	2	15887,23217,	0,15891,
596	improved_6498	1516935	1549670	450M05	1000	-	1516935	1549670	34,94,168	4	4619,40,5,27868,	0,4619,4659,4867,
596	improved_6498	1532094	1570709	445G19	1000	-	1532094	1570709	0,0,0	1	38615,	0,
74	improved_6498	1554465	1595898	440B24	1000	+	1554465	1595898	0,0,0	1	41433,	0,
597	improved_6498	1583922	1628555	430O17	1000	-	1583922	1628555	0,0,0	1	44633,	0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GEP Fosmids (gep_fosmids) Track Description


	Description This track shows the genomic regions that have been improved by students participating in the Genomics Education Partnership sequence improvement project. Fosmid projects with consensus sequences that differ from the consensus sequence of the final scaffold are highlighted in blue.