Schema for BLASTN | RECON | MAP Repeats - RepeatMasker using BLASTN | RECON

Schema for BLASTN | RECON | MAP Repeats - RepeatMasker using BLASTN | RECON | MAP Repeat Library

Database: DmojImproved Primary Table: blastn_recon_map Row Count: 108,080

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	improved_6498	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	768	`int(10) unsigned`	range
`name`	DmojImproved_recon_752	`varchar(255)`	values
`score`	4467	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	0	`int(10) unsigned`	range
`thickEnd`	768	`int(10) unsigned`	range
`itemRgb`	15095053	`int(10) unsigned`	range
`blockCount`	1	`int(10) unsigned`	range
`blockSizes`	768	`longblob`
`chromStarts`	0	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	itemRgb	blockCount	blockSizes	chromStarts
585	improved_6498	0	768	DmojImproved_recon_752	4467	-	0	768	230,85,13	1	768	0
585	improved_6498	768	1209	DmojImproved_recon_1	3805	+	768	1209	230,85,13	1	441	0
585	improved_6498	1234	4624	DmojImproved_recon_2	30748	+	1234	4624	230,85,13	1	3390	0
585	improved_6498	4608	9926	DmojImproved_recon_1	22893	+	4608	9926	230,85,13	2	2625,665	0,4653
585	improved_6498	7233	9261	DmojImproved_recon_577	13958	+	7233	9261	0,0,64	1	2028	0
585	improved_6498	9300	15073	DmojImproved_recon_752	4980	-	9300	15073	230,85,13	2	1022,848	0,4925
585	improved_6498	10322	13236	DmojImproved_recon_1	25516	+	10322	13236	230,85,13	1	2914	0
585	improved_6498	13281	14238	DmojImproved_recon_3	8849	+	13281	14238	230,85,13	1	957	0
585	improved_6498	15073	17517	DmojImproved_recon_1	21939	+	15073	17517	230,85,13	1	2444	0
585	improved_6498	47814	48960	DmojImproved_recon_16	6237	+	47814	48960	230,85,13	1	1146	0

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

BLASTN | RECON | MAP Repeats (blastn_recon_map) Track Description


	Description This track shows the transposon fragments identified by RepeatMasker using the BLASTN+RECON+MAP library. See the supplemental methods section of the manuscript for details. References Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0. http://www.repeatmasker.org. 1996-2010.

Description