Schema for Tallymer - Repetitive Regions Identified by Tallymer

Database: DmojImproved Primary Table: tallymer Data last updated: 2013-05-20
Big Bed File: /gbdb/DmojImproved/bbi/tallymer.bb
Item Count: 265,952
Format description: Browser Extensible Data

field	example	description
`chrom`	improved_6498	Reference sequence chromosome or scaffold
`chromStart`	2271157	Start position in chromosome
`chromEnd`	2272081	End position in chromosome

Sample Rows

chrom	chromStart	chromEnd
improved_6498	2271157	2272081
improved_6498	2272098	2272239
improved_6498	2272345	2272389
improved_6498	2272492	2272533
improved_6498	2272671	2272740
improved_6498	2272816	2272859
improved_6498	2273144	2273191
improved_6498	2273462	2273513
improved_6498	2273847	2273898
improved_6498	2274071	2274119

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. mojavensis genome. The index is created for 17-mers that occur more than 40 times in the genome. Overlapping 17-mers that span less than 60 bases were filtered from the results. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References