Schema for GlimmerHMM - GlimmerHMM Gene Predictions
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Database: DobsGB1 Primary Table: glimmer Row Count: 24,092   Data last updated: 2022-10-20
field | example | SQL type | info |
bin | 585 | smallint(5) unsigned | range |
name | BDQP01000001.path1.gene1 | varchar(255) | values |
chrom | BDQP01000001 | varchar(255) | values |
strand | - | char(1) | values |
txStart | 2072 | int(10) unsigned | range |
txEnd | 6218 | int(10) unsigned | range |
cdsStart | 2072 | int(10) unsigned | range |
cdsEnd | 6218 | int(10) unsigned | range |
exonCount | 3 | int(10) unsigned | range |
exonStarts | 2072,4232,5853, | longblob | |
exonEnds | 2531,4389,6218, | longblob | |
score | 0 | int(11) | range |
name2 | BDQP01000001.path1.gene1 | varchar(255) | values |
cdsStartStat | unk | enum('none', 'unk', 'incmpl', 'cmpl') | values |
cdsEndStat | unk | enum('none', 'unk', 'incmpl', 'cmpl') | values |
exonFrames | 0,2,0, | longblob | |
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Sample Rows
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bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds | score | name2 | cdsStartStat | cdsEndStat | exonFrames |
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585 | BDQP01000001.path1.gene1 | BDQP01000001 | - | 2072 | 6218 | 2072 | 6218 | 3 | 2072,4232,5853, | 2531,4389,6218, | 0 | BDQP01000001.path1.gene1 | unk | unk | 0,2,0, |
585 | BDQP01000001.path1.gene2 | BDQP01000001 | - | 10555 | 10681 | 10555 | 10681 | 1 | 10555, | 10681, | 0 | BDQP01000001.path1.gene2 | unk | unk | 0, |
585 | BDQP01000001.path1.gene3 | BDQP01000001 | - | 12748 | 16281 | 12748 | 16281 | 5 | 12748,13707,14997,15580,16136, | 12880,13840,15130,15778,16281, | 0 | BDQP01000001.path1.gene3 | unk | unk | 0,2,1,1,0, |
585 | BDQP01000001.path1.gene4 | BDQP01000001 | + | 18289 | 27307 | 18289 | 27307 | 10 | 18289,18970,19303,20097,20444,23346,25913,26185,26487,27134, | 18323,19158,19415,20278,20694,23987,26047,26361,26722,27307, | 0 | BDQP01000001.path1.gene4 | unk | unk | 0,1,0,1,2,0,2,1,0,1, |
585 | BDQP01000001.path1.gene5 | BDQP01000001 | + | 29940 | 32204 | 29940 | 32204 | 4 | 29940,30315,30773,31448, | 29947,30687,31387,32204, | 0 | BDQP01000001.path1.gene5 | unk | unk | 0,1,1,0, |
585 | BDQP01000001.path1.gene6 | BDQP01000001 | - | 36261 | 42040 | 36261 | 42040 | 12 | 36261,37909,38186,38378,38594,38769,39369,39807,39984,40149,40864,41860, | 36557,38092,38337,38536,38701,38979,39408,39925,40091,40805,41149,42040, | 0 | BDQP01000001.path1.gene6 | unk | unk | 1,1,0,1,2,2,2,1,2,0,0,0, |
585 | BDQP01000001.path1.gene7 | BDQP01000001 | - | 45004 | 47408 | 45004 | 47408 | 6 | 45004,46007,46501,46772,46886,47177, | 45041,46428,46695,46821,47100,47408, | 0 | BDQP01000001.path1.gene7 | unk | unk | 2,1,2,1,0,0, |
585 | BDQP01000001.path1.gene8 | BDQP01000001 | - | 49657 | 51403 | 49657 | 51403 | 5 | 49657,49733,49970,50335,50566, | 49692,49898,50265,50488,51403, | 0 | BDQP01000001.path1.gene8 | unk | unk | 1,1,0,0,0, |
585 | BDQP01000001.path1.gene9 | BDQP01000001 | + | 53755 | 59757 | 53755 | 59757 | 8 | 53755,53970,55455,56381,56912,57104,57678,59283, | 53758,54223,55967,56443,57021,57270,57860,59757, | 0 | BDQP01000001.path1.gene9 | unk | unk | 0,0,1,0,2,0,1,0, |
585 | BDQP01000001.path1.gene10 | BDQP01000001 | + | 62487 | 73387 | 62487 | 73387 | 5 | 62487,65040,65976,68078,73000, | 62721,65459,66036,68313,73387, | 0 | BDQP01000001.path1.gene10 | unk | unk | 0,0,2,2,0, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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GlimmerHMM (glimmer) Track Description
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