Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DobsGB1 Primary Table: gc5Base Row Count: 35,927 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	BDQP01000001	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5120	`int(10) unsigned`	range
`name`	BDQP01000001.0	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	1024	`int(10) unsigned`	range
`offset`	0	`int(10) unsigned`	range
`file`	/gbdb/DobsGB1/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	1024	`int(10) unsigned`	range
`sumData`	48540	`double`	range
`sumSquares`	2874000	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	BDQP01000001	0	5120	BDQP01000001.0	5	1024	0	/gbdb/DobsGB1/wib/gc5Base.wib	0	100	1024	48540	2874000
585	BDQP01000001	5120	10240	BDQP01000001.1	5	1024	1024	/gbdb/DobsGB1/wib/gc5Base.wib	0	100	1024	46680	2695200
585	BDQP01000001	10240	15360	BDQP01000001.2	5	1024	2048	/gbdb/DobsGB1/wib/gc5Base.wib	0	100	1024	46700	2758800
585	BDQP01000001	15360	20480	BDQP01000001.3	5	1024	3072	/gbdb/DobsGB1/wib/gc5Base.wib	0	100	1024	47320	2815200
585	BDQP01000001	20480	25600	BDQP01000001.4	5	1024	4096	/gbdb/DobsGB1/wib/gc5Base.wib	0	100	1024	49080	2942400
585	BDQP01000001	25600	30720	BDQP01000001.5	5	1024	5120	/gbdb/DobsGB1/wib/gc5Base.wib	0	100	1024	56760	3708000
585	BDQP01000001	30720	35840	BDQP01000001.6	5	1024	6144	/gbdb/DobsGB1/wib/gc5Base.wib	0	100	1024	52820	3345200
585	BDQP01000001	35840	40960	BDQP01000001.7	5	1024	7168	/gbdb/DobsGB1/wib/gc5Base.wib	0	100	1024	51740	3166800
585	BDQP01000001	40960	46080	BDQP01000001.8	5	1024	8192	/gbdb/DobsGB1/wib/gc5Base.wib	0	100	1024	47800	2818400
585	BDQP01000001	46080	51200	BDQP01000001.9	5	1024	9216	/gbdb/DobsGB1/wib/gc5Base.wib	0	100	1024	50560	3036800

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.