Schema for Tallymer - Repetitive Regions Identified by Tallymer

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Database: DobsGB1 Primary Table: tallymer Data last updated: 2018-02-23
Big Bed File: /gbdb/DobsGB1/bbi/DobsGB1.tallymer.bb
Item Count: 157,105
Format description: Browser Extensible Data

field	example	description
`chrom`	BDQP01000001	Reference sequence chromosome or scaffold
`chromStart`	1376123	Start position in chromosome
`chromEnd`	1376165	End position in chromosome
`name`	tallymer_4060	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
BDQP01000001	1376123	1376165	tallymer_4060
BDQP01000001	1380975	1381073	tallymer_4066
BDQP01000001	1381112	1381260	tallymer_4068
BDQP01000001	1381299	1381348	tallymer_4070
BDQP01000001	1381389	1381533	tallymer_4072
BDQP01000001	1381566	1381607	tallymer_4073
BDQP01000001	1381681	1381777	tallymer_4074
BDQP01000001	1391944	1391995	tallymer_4088
BDQP01000001	1395975	1396022	tallymer_4093
BDQP01000001	1402017	1402063	tallymer_4109

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. obscura genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References