Schema for GlimmerHMM - GlimmerHMM Gene Predictions
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Database: DperCAF1 Primary Table: glimmer Row Count: 21,353   Data last updated: 2022-10-20
field | example | SQL type | info |
bin | 585 | smallint(5) unsigned | range |
name | super_0.path1.gene1 | varchar(255) | values |
chrom | super_0 | varchar(255) | values |
strand | - | char(1) | values |
txStart | 1367 | int(10) unsigned | range |
txEnd | 27161 | int(10) unsigned | range |
cdsStart | 1367 | int(10) unsigned | range |
cdsEnd | 27161 | int(10) unsigned | range |
exonCount | 7 | int(10) unsigned | range |
exonStarts | 1367,4717,6206,7160,9348,26... | longblob | |
exonEnds | 1524,4931,6297,7404,9715,26... | longblob | |
score | 0 | int(11) | range |
name2 | super_0.path1.gene1 | varchar(255) | values |
cdsStartStat | unk | enum('none', 'unk', 'incmpl', 'cmpl') | values |
cdsEndStat | unk | enum('none', 'unk', 'incmpl', 'cmpl') | values |
exonFrames | 2,1,0,2,1,1,0, | longblob | |
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Sample Rows
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bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds | score | name2 | cdsStartStat | cdsEndStat | exonFrames |
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585 | super_0.path1.gene1 | super_0 | - | 1367 | 27161 | 1367 | 27161 | 7 | 1367,4717,6206,7160,9348,26788,27148, | 1524,4931,6297,7404,9715,26872,27161, | 0 | super_0.path1.gene1 | unk | unk | 2,1,0,2,1,1,0, |
585 | super_0.path1.gene2 | super_0 | + | 30484 | 32772 | 30484 | 32772 | 4 | 30484,31727,32065,32760, | 30550,32006,32143,32772, | 0 | super_0.path1.gene2 | unk | unk | 0,0,0,0, |
585 | super_0.path1.gene3 | super_0 | - | 34774 | 40320 | 34774 | 40320 | 6 | 34774,34853,35301,38231,39697,40265, | 34796,35204,37803,38427,40021,40320, | 0 | super_0.path1.gene3 | unk | unk | 2,2,2,1,1,0, |
585 | super_0.path1.gene4 | super_0 | - | 43459 | 48571 | 43459 | 48571 | 5 | 43459,46517,46962,47244,48457, | 44086,46845,47065,47677,48571, | 0 | super_0.path1.gene4 | unk | unk | 0,2,1,0,0, |
585 | super_0.path1.gene5 | super_0 | - | 53937 | 55119 | 53937 | 55119 | 2 | 53937,54365, | 54329,55119, | 0 | super_0.path1.gene5 | unk | unk | 1,0, |
585 | super_0.path1.gene6 | super_0 | + | 59524 | 61227 | 59524 | 61227 | 2 | 59524,60393, | 59536,61227, | 0 | super_0.path1.gene6 | unk | unk | 0,0, |
585 | super_0.path1.gene7 | super_0 | + | 63640 | 64399 | 63640 | 64399 | 1 | 63640, | 64399, | 0 | super_0.path1.gene7 | unk | unk | 0, |
585 | super_0.path1.gene8 | super_0 | - | 66438 | 67482 | 66438 | 67482 | 1 | 66438, | 67482, | 0 | super_0.path1.gene8 | unk | unk | 0, |
585 | super_0.path1.gene9 | super_0 | - | 69494 | 70622 | 69494 | 70622 | 1 | 69494, | 70622, | 0 | super_0.path1.gene9 | unk | unk | 0, |
585 | super_0.path1.gene10 | super_0 | + | 72623 | 76080 | 72623 | 76080 | 2 | 72623,75813, | 72689,76080, | 0 | super_0.path1.gene10 | unk | unk | 0,0, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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GlimmerHMM (glimmer) Track Description
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