Schema for Tallymer - Repetitive Regions Identified by Tallymer

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Database: DperCAF1 Primary Table: tallymer Data last updated: 2017-08-06
Big Bed File: /gbdb/DperCAF1/bbi/DperCAF1.tallymer.bb
Item Count: 251,736
Format description: Browser Extensible Data

field	example	description
`chrom`	super_0	Reference sequence chromosome or scaffold
`chromStart`	7910112	Start position in chromosome
`chromEnd`	7910174	End position in chromosome
`name`	tallymer_351050	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
super_0	7910112	7910174	tallymer_351050
super_0	7915493	7915542	tallymer_351057
super_0	7917322	7917381	tallymer_351059
super_0	7917552	7917594	tallymer_351060
super_0	7925860	7925904	tallymer_351074
super_0	7930133	7930224	tallymer_351078
super_0	7932121	7932162	tallymer_351086
super_0	7932544	7932610	tallymer_351090
super_0	7932611	7932692	tallymer_351091
super_0	7932787	7932842	tallymer_351094

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. persimilis genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References