These tracks show the normalized density of CAGE reads from different tissues of D. pseudoobscura. The CAGE datasets were produced by the modENCODE project and were obtained
from the NCBI Sequence Read Archive database under the accession number SRP001602.
Methods
Each dataset was mapped to the D. pseudoobscura DpseGB3 assembly using bwa with default parameters.
The alignment results were analyzed by CAGEr.
Consensus promoters across all the samples were produced by the consensusClusters function in CAGEr with the following parameters: